Basic Information
VIS ID
TVIS44031364
Fusion event
HTLV-1-EDA integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q13.1
Reference genome
NCBI36/hg18
Start
69165731/70029156 (Hg38)
End
69165731/70029156 (Hg38)
Orient
-
Location type
Intronic
Target gene
EDA
miRNAs that regulate target gene
hsa-let-7f-5p
Nearest miRNA
hsa-let-7f-2/Upstream/6233; hsa-mir-105-1/Downstream/4189221;
Nearest TSS
ENST00000429181/Upstream/72132; ENST00000338352/Downstream/14427;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/411937, chrX-CpG: 76/Downstream/33378
Upstream sequence
tcccttttcttatagagtttatctcctagaggaagagagaacaaagaaacaagatatttacaaatagcagtgggctctatgaagaaaattaaTAGAAAGG
Downstream sequence
GAGCAAAACACTAGAGAAGCCAATGCCATTGCCTCAGGGTCACACAGTGATGGGAATGCTCTCTCATTGTTCTCCATGGGTGCCCGGTGGGGCTTGCCTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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