Basic Information
VIS ID
TVIS44031384
Fusion event
HTLV-1-TRHDE integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
71130347/72450300 (Hg38)
End
71130347/72450300 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRHDE
Nearest miRNA
hsa-let-7i/Upstream/2865477; hsa-mir-1178/Downstream/6968957;
Nearest TSS
ENST00000382841/Upstream/175791; ENST00000549401/Downstream/110239;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/176529, chr12-CpG: 38/Downstream/2087412
Upstream sequence
CTATATTTTACATAGGATTCTATTATCTCTTACTTAGACTACTACAATATCTGCTTCTATTCTCCTCCCATCTAAAGcagtgattttcaaccttcatttc
Downstream sequence
acttttgggccattaaacaaatgaagaagcctaggtcctaccttagaaaaattaagaatcggtggaagtgaacaccaggcattaatttttACAATTTATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate