Basic Information
VIS ID
TVIS44031393
Fusion event
HTLV-1-LINC01193 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q11.2
Reference genome
NCBI36/hg18
Start
19438159/20968171 (Hg38)
End
19438159/20968171 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01193
Nearest miRNA
hsa-mir-3118-2/Upstream/27838; hsa-mir-10393/Downstream/438214;
Nearest TSS
ENST00000557528/Upstream/27733; ENST00000554209/Downstream/10849;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/89152, chr15-CpG: 30/Downstream/113124
Upstream sequence
ttaagttctagggtacatgtgcacaatgtgcaggtttgttacatatgtatgcatgtgccatgttggtgtgctgcacccattaactcgtcatttacattag
Downstream sequence
gtatatatcctaaagctatccctccctcctctccccaccccacaacaggccccggtgtgtgatgttccccttcctgtgtccaagtgttctcattgttcaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate