Basic Information
VIS ID
TVIS44031402
Fusion event
HTLV-1-PROS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q11.1
Reference genome
NCBI36/hg18
Start
95173544/93972010 (Hg38)
End
95173544/93972010 (Hg38)
Orient
+
Location type
Intronic
Target gene
PROS1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-494-3p
Nearest miRNA
hsa-let-7g/Upstream/6745733; hsa-mir-12124/Downstream/2387954;
Nearest TSS
ENST00000440867/Upstream/13256; ENST00000478400/Downstream/1629;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/4857053, chr3-CpG: 39/Downstream/1700
Upstream sequence
TTAAGCAATCAAAAACTTTTAACTGAAAGCATTATGGGGCCAACTATTCTTTATGTGATATACTTGAAGAATTAATTTATCTGCTCTATCAGTGTTATAT
Downstream sequence
ATAACAAGTGTAATTCCCCATATGTTTATATATAATACACATACACAAACCCATATAATTTTTACCTCTGCCTAGATTCAGTCAAAATGTAACAATCTCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate