Basic Information
VIS ID
TVIS44031410
Fusion event
HTLV-1-LINC02642 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
NCBI36/hg18
Start
7554855/7472887 (Hg38)
End
7554855/7472887 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02642
Nearest miRNA
hsa-mir-3155a/Upstream/1320610; hsa-mir-107/Downstream/4657873;
Nearest TSS
ENST00000439456/Upstream/945; ENST00000414631/Downstream/60320;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/59637, chr10-CpG: 18/Downstream/103527
Upstream sequence
ttggggctaaaatcaaactgttggcagagcttcattccttcttgaggctctaaaggagaagctatttctttaccttttgcagcttctaaaggccgcctac
Downstream sequence
gttcgttagctggtagccccctcctccatcctcagagctcgtcactacagcctctgattttgcctctgcatctcctttctcaccctgactgtcctgccag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate