Basic Information
VIS ID
TVIS44031424
Fusion event
HTLV-1-ANKS1B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
NCBI36/hg18
Start
98177070/99259161 (Hg38)
End
98177070/99259161 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKS1B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7i/Upstream/1263713; hsa-mir-1178/Downstream/930723;
Nearest TSS
ENST00000382841/Upstream/12726; ENST00000324341/Downstream/84629;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/363565, chr12-CpG: 85/Downstream/725304
Upstream sequence
cgtatgagatataaatctggctaatgcaaagccggcttttttccgatacatcacgacgcTTTGTGTCGGATTACCCTAGAACCTCCTATGGCATCAGTAC
Downstream sequence
AATGCACCATCCACTGGAGTGTCCTATCCAAGTAGCACTGGAGCTTGAAAACCACCCAGTGGGCCTCTTTCCAGGTATCAGTAGTGATCTTTGGGTATTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate