Basic Information
VIS ID
TVIS44031429
Fusion event
HTLV-1-RP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q11.23
Reference genome
NCBI36/hg18
Start
55652283/54577170 (Hg38)
End
55652283/54577170 (Hg38)
Orient
+
Location type
Intronic
Target gene
RP1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-124-1/Upstream/11680895; hsa-mir-10400/Downstream/7137618;
Nearest TSS
ENST00000518652/Upstream/18001; ENST00000220676/Downstream/38897;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/106541, chr8-CpG: 25/Downstream/44073
Upstream sequence
gcagtggcaatctcagctcactgcaacctctgcttcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacaagccacc
Downstream sequence
atacccagctaatttttgtatttttagtagagatggtgtttcatcaagttggtcaacctggtctcgaactcctgacctcaagtgacctgcccacctcagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate