Basic Information
VIS ID
TVIS44031436
Fusion event
HTLV-1-LINC02465 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
NCBI36/hg18
Start
130944574/129803969 (Hg38)
End
130944574/129803969 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02465
Nearest miRNA
hsa-mir-12113/Upstream/4296662; hsa-mir-1305/Downstream/13539491;
Nearest TSS
ENST00000502981/Upstream/15010; ENST00000507099/Downstream/33392;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/710225, chr4-CpG: 27/Downstream/1919223
Upstream sequence
ACACTTTTGAAGCAGGATACCAAAATAAAAAATGTAAAGAGAAAGCAGGCTACATGGAGGAAAGCACATTTAATGCTGATAATTAGCATCTAAAAACTGG
Downstream sequence
ATACCTTAGTTCCTTGACATCAAGTTTTCTGCTTGACCCAAATGATAACTTGTTCTCCTAGGGGTTGAAGTAGATTAGAGCAAGAAAGTTGTAAAATTAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate