Basic Information
VIS ID
TVIS44031450
Fusion event
HTLV-1-ALX3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
110410574/110066429 (Hg38)
End
110410574/110066429 (Hg38)
Orient
-
Location type
Intronic
Target gene
ALX3
Nearest miRNA
hsa-mir-101-1/Upstream/467462; hsa-mir-11399/Downstream/2395341;
Nearest TSS
ENST00000473358/Upstream/8089; ENST00000554808/Downstream/4271;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/31109, chr1-CpG: 271/Downstream/1214
Upstream sequence
CCAgcctgtacacaggcctgtacacaggTAGCCCACAGCTACAGCCCAGGGACCAGGGCTCCTTCACAACTCAGGTGGAGCACAGGGGAGAAAGTGTTCC
Downstream sequence
AGTCTCTGACTTCCATTCTTGGGCCAGCACATTTCAGGTTTAGAGGCAGTTCCATTTGATAGAAGCTTAGGAAGGAAGACTCACAGAAGTTGAACCAAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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