Basic Information
VIS ID
TVIS44031453
Fusion event
HTLV-1-SCYL2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
NCBI36/hg18
Start
99207193/100289284 (Hg38)
End
99207193/100289284 (Hg38)
Orient
+
Location type
Intronic
Target gene
SCYL2
miRNAs that regulate target gene
hsa-mir-92a-3p
Nearest miRNA
hsa-let-7i/Upstream/99335; hsa-mir-1178/Downstream/3641141;
Nearest TSS
ENST00000382841/Upstream/6152; ENST00000553148/Downstream/26274;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/21416, chr12-CpG: 47/Downstream/284231
Upstream sequence
GGAGTTAAGATTAGGTGTTTATATGAGTGCTATTTAAAGCTGTTACTCAGCCTAAATGACTGATTTCTTTCTTGAAGACATGCATCGTGTTTTGCTTTGG
Downstream sequence
TGTTCCGTATTTTCCCTGTGTTATTTCTGGGGCGACAGAATGATGTCTTGGCTAAAAATATAGTCCTGTGGACTAACTGTTTGAAACTTGACTTTTTTTa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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