Basic Information
VIS ID
TVIS44031459
Fusion event
HTLV-1-LOC112268044 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
p11.1
Reference genome
NCBI36/hg18
Start
43999887/42911226 (Hg38)
End
43999887/42911226 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112268044
Nearest miRNA
hsa-mir-101-2/Upstream/1677391; hsa-let-7a-1/Downstream/27898749;
Nearest TSS
ENST00000422679/Upstream/203426; ENST00000620059/Downstream/67625;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/58245, chr9-CpG: 31/Downstream/63578
Upstream sequence
ACAATGTAGCTTAAGACCAATTCAAAAGTATCACATAATTTTGAAATCACAATTTTCTTATGCCAACTGATCTTAATCATCAAATGACTCCACAGTGAGA
Downstream sequence
ATCATTACTCTGAAAGATTGATTTTGTTATAATAATAATGGAAATGTAAATATTTAAAAGAAAAAACAGATGCCATTTTTCTTCTAGAACTCTACAAAGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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