Basic Information
VIS ID
TVIS44031465
Fusion event
HTLV-1-SATB1-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
NCBI36/hg18
Start
18491019/18474523 (Hg38)
End
18491019/18474523 (Hg38)
Orient
+
Location type
Intronic
Target gene
SATB1-AS1
Nearest miRNA
hsa-mir-12127/Upstream/1541263; hsa-let-7g/Downstream/840325;
Nearest TSS
ENST00000440867/Upstream/28935; ENST00000475063/Downstream/673931;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/28982, chr3-CpG: 21/Downstream/672472
Upstream sequence
TTCAACTATTTCTTTGATGACTATCTATAGTGATTGATTTGTTGATATAAATGTTAAGCTGacatatatttactaaacgtctattattagttagatatta
Downstream sequence
ctaactgctatgcataccagagagcatgaagtataggctctcacctaaaggaactacagtattgttgggtaataaattgtatgaaacagaacatttttag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate