Basic Information
VIS ID
TVIS44031501
Fusion event
HTLV-1-LINC02641 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q26.13
Reference genome
NCBI36/hg18
Start
125214240/123464734 (Hg38)
End
125214240/123464734 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
LINC02641
Nearest miRNA
hsa-mir-107/Upstream/1047667; hsa-mir-202/Downstream/1568049;
Nearest TSS
ENST00000439456/Upstream/15381; ENST00000451295/Downstream/109493;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/309524, chr10-CpG: 115/Downstream/201280
Upstream sequence
cctagtcccagagcaaccctttgccccactcttatagctggttcttcctcattttttacttctaagcctaaaaacgacttcctcaatgactattcctgac
Downstream sequence
tacctgataacaacaggctctcccactctctcctttctctatttctgcccattgtttgatttatccttagtacatatcaaatttaggggctgctgtctcc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate