Basic Information
VIS ID
TVIS44031517
Fusion event
HTLV-1-LOC105369339 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
NCBI36/hg18
Start
63693702/64169654 (Hg38)
End
63693702/64169654 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
LOC105369339
Nearest miRNA
hsa-mir-129-2/Upstream/1376883; hsa-let-7a-2/Downstream/172195;
Nearest TSS
ENST00000527297/Upstream/3548; ENST00000540736/Downstream/15618;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/3056, chr11-CpG: 147/Downstream/15551
Upstream sequence
gtagagacgaggtttcactatgttggtcaggctggtctcgaactcctgacctcagatgattcacccacctcggcctcccaaaatgctgggattacagaca
Downstream sequence
tgagccactgtgcccagccAACAAATATGTATTTAAAAAAACCATTTATATCGTGTTATTCACCTGCTCAGAAATCTCCAAAACCCACGTCCTACACGGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate