Basic Information
VIS ID
TVIS44031530
Fusion event
HTLV-1-LOC105373718 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
NCBI36/hg18
Start
161133684/160568927 (Hg38)
End
161133684/160568927 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373718
Nearest miRNA
hsa-mir-128-1/Upstream/161045; hsa-mir-10b/Downstream/8014016;
Nearest TSS
ENST00000437798/Upstream/75133; ENST00000477952/Downstream/567981;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/75067, chr2-CpG: 39/Downstream/591445
Upstream sequence
TATATCCTAGTTCCGTTTTCACTCATCTCTTTTTTTGTTCATCTCCTTTACTCTTAGTTTTTACCTCCACTGAAGAATGAATGAAATATAAATGGATTGG
Downstream sequence
CACTAAAATCAACTTGCTTTCTGTCCATTCAAATCAGCCAACTCAACATGTCTGAAAACTCATCAACCTTCCTACCAAACTTGCTCTTCTCCCTGCATTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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