Basic Information
VIS ID
TVIS44031531
Fusion event
HTLV-1-ABCC13 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
NCBI36/hg18
Start
14583938/14289746 (Hg38)
End
14583938/14289746 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCC13
Nearest miRNA
hsa-mir-10396a/Upstream/565472; hsa-let-7c/Downstream/2249343;
Nearest TSS
ENST00000624081/Upstream/65371; ENST00000449214/Downstream/93441;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/73159, chr21-CpG: 50/Downstream/93304
Upstream sequence
GAAACATTTCTATAATATCTACCTGCAATGGTTTACAGGCAGACAATGAAATTGATCTTTTGACTGTGCCACCTTTTTCAAGGAAACCTTGACTTATACC
Downstream sequence
TAGCTGTCATATGAAGGAAATGCAAAGAAACATATATTTTATTAACTGGTGATTATATTTTTACTATTGAAAAATTTCCAAGTTGTTAGAGTTTTTAATA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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