Basic Information
VIS ID
TVIS44031535
Fusion event
HTLV-1-PCID2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
NCBI36/hg18
Start
112878655/113176340 (Hg38)
End
112878655/113176340 (Hg38)
Orient
+
Location type
Intronic
Target gene
PCID2
miRNAs that regulate target gene
hsa-mir-93-5p
Nearest miRNA
hsa-mir-1267/Upstream/2835311; hsa-mir-4502/Downstream/86580;
Nearest TSS
ENST00000623511/Upstream/11157; ENST00000474116/Downstream/2035;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/21871, chr13-CpG: 236/Downstream/31708
Upstream sequence
ATGAGCTCTTATAGTTTGTGTTCTTCTTTAGTAAATTTTTTATAAACGGGGAAATGTGCATAGTCTGAAAAATGGCAGTGCTGGggactaaactgtgtcc
Downstream sequence
cccaaatttcttacattgaagtcctagccccagtgtgactgtatctggaggtaaggtcttcagggggtaactaaggctaaatgtggtcataagggtgagg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate