Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene43247409430770274313035143138486431853084313690743141233431203014312268243159802431619374313682443138334431286644313012243154737431561804315649843157820431266014312740043130363431311064313280143133200431516014315180043162218
Basic Information
VIS ID
TVIS44031547
Fusion event
HTLV-1-CSGALNACT2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
NCBI36/hg18
Start
42977672/43162218 (Hg38)
End
42977672/43162218 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
CSGALNACT2
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-29b-3p ; hsa-mir-377-3p
Nearest miRNA
hsa-mir-1265/Upstream/164537; hsa-mir-107/Downstream/2001796;
Nearest TSS
ENST00000439456/Upstream/23732; ENST00000451438/Downstream/40464;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/23444, chr10-CpG: 38/Downstream/40111
Upstream sequence
aaccagagacttgaataccatcaaaattctcgtctccttgtctgtttttctctgcatgttgacttcattctcctgttgcagattggcttcttccacatgg
Downstream sequence
tgagggatatgactgttggcggctctgggctcacatcttctcagctttgccatcagagaggaaagagctttctcccagctccagttgagaaaatcccagg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate