Basic Information
VIS ID
TVIS44031604
Fusion event
HTLV-1-LOC105369468 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
104754727/105378790 (Hg38)
End
104754727/105378790 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369468
Nearest miRNA
hsa-mir-10392/Upstream/1528810; hsa-let-7a-2/Downstream/5968967;
Nearest TSS
ENST00000527297/Upstream/239064; ENST00000527177/Downstream/152907;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1214460, chr11-CpG: 31/Downstream/231609
Upstream sequence
GGTTAGGCTGAAATGCCATGAAGAAAGTATTATATGACAGTGGGATTTTATGCAAAGATCCAAGAATATTTAAATTCTGACCCAACCAGTCCTCCTATCC
Downstream sequence
TACCTGCCGGGCAAAAAAGAAATCTGTGTTTGTTTGTGATtgtgtgtgtatatatatgtatatacacatacatacacacatttctttatatatatTCtat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate