Basic Information
VIS ID
TVIS44031616
Fusion event
HTLV-1-PTCHD1-AS integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
p22.11
Reference genome
NCBI36/hg18
Start
22490288/22562250 (Hg38)
End
22490288/22562250 (Hg38)
Orient
+
Location type
Intronic
Target gene
PTCHD1-AS
Nearest miRNA
hsa-mir-23c/Upstream/2545063; hsa-let-7f-2/Downstream/5933305;
Nearest TSS
ENST00000429181/Upstream/134118; ENST00000442155/Downstream/136207;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/620667, chrX-CpG: 25/Downstream/769917
Upstream sequence
TGCGTCTAGAAAGCTACATTGCAGATAAAATGTAATCTCACATGAACTTTGTATATACAGGAAAATTCATTATATTAGCTCCAGAAAGGAAGGCAAAAGG
Downstream sequence
GCACGTTTCTCTACATTGATGGAAATCATAGATTTTTTTAAACTGAGGCTTTAAGAGTCAGAGATGGATGGTATCCCACTTTCTAAATGTCTATACATTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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