Basic Information
VIS ID
TVIS44031650
Fusion event
HTLV-1-LOC105373277 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
NCBI36/hg18
Start
246753232/248523308 (Hg38)
End
246753232/248523308 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1I
Target gene
LOC105373277
Nearest miRNA
hsa-mir-101-1/Upstream/1321248; hsa-mir-3124/Downstream/303069;
Nearest TSS
ENST00000473358/Upstream/1693; ENST00000438623/Downstream/25448;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/585884, chr1-CpG: 49/Downstream/168421
Upstream sequence
ATTTTCCCAGAATATGTCACTTTTAACTGGAGAATGGAACCATCCCACTCTATTGGCTTATTTACAACACGAGAAACACAAATATTAAGAGTTGTGATGC
Downstream sequence
TTTGGTTCCACAGAATTGTGGGATGCAAATAATGACTAATATTTTATTAAAGGAATCAAATAAGCAAACTTGAATTAAGGAGATTGATTAAAAGTTGAGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate