Basic Information
VIS ID
TVIS44031659
Fusion event
HTLV-1-EDNRB-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
77339337/77867201 (Hg38)
End
77339337/77867201 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
EDNRB-AS1
Nearest miRNA
hsa-mir-1297/Upstream/169085; hsa-mir-1267/Downstream/9751464;
Nearest TSS
ENST00000623511/Upstream/38979; ENST00000414743/Downstream/36367;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/168430, chr13-CpG: 70/Downstream/51089
Upstream sequence
atcttagaaggcacagtgagagtctgtggcacttgagatatgacctgttcccttttcttcctctcccccagctcattgtgtcagaaggtcccctctgggt
Downstream sequence
gagtgtggtgagtgtagtcaaaaagacaagactttcttgatgtctctcctcccccagctcccagtcaaggacttagtatcttctccaggagggtcaggcc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate