Basic Information
VIS ID
TVIS44031665
Fusion event
HTLV-1-LOC105375951 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
p24.3
Reference genome
NCBI36/hg18
Start
1936086/1946086 (Hg38)
End
1936086/1946086 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375951
Nearest miRNA
hsa-mir-1302-9/Upstream/1915805; hsa-let-7a-1/Downstream/2904211;
Nearest TSS
ENST00000422679/Upstream/891462; ENST00000637134/Downstream/34204;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/893846, chr9-CpG: 266/Downstream/68745
Upstream sequence
TATTTATGTGAAGCTGGGTGCTGATGCTCATCATTTTCATAATTACTTTATTTCTCATCTCCCCCATTTCCATGGGCCAAACATAAAGTGTGCAGGAAAG
Downstream sequence
CAACTACCTATATGTGCTTCTATTTACTCAAGTTTACAGCTATCGTACAGTACTGATTAATCCTCCCTTCTCCATGACACTGAGGCAGTAGCATTCTAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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