Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene347604053459332934675699346723143467506634676448346789283466685834668050346452293464639734633535346344023463961634639765346630763466322534676867
Basic Information
VIS ID
TVIS44031667
Fusion event
HTLV-1-SCGB1B2P integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
NCBI36/hg18
Start
39859612/34676867 (Hg38)
End
39859612/34676867 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
SCGB1B2P
Nearest miRNA
hsa-mir-10395/Upstream/14277513; hsa-let-7e/Downstream/445833;
Nearest TSS
ENST00000633603/Upstream/1168; ENST00000512455/Downstream/772;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/98875, chr19-CpG: 85/Downstream/373
Upstream sequence
AAATGATTGAAGTCAATTAACATTTAAGTGTTAAAAAGAAAGTAAACAACCCAAATATACACAAACAGTAGACTGCTCTGGCTTGCATACAGAGAGGTCC
Downstream sequence
ATTGCCCTTTTGGGTGGGCCTAAGAAGCACTTCTGGGGAGAGGGGGCGTCAGGCTGTGATGGCTGCGGGAGGAGTGACTCCTCCCAGGATGAGGGTCTCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate