Basic Information
VIS ID
TVIS44031676
Fusion event
HTLV-1-CHN2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
NCBI36/hg18
Start
29384196/29378055 (Hg38)
End
29384196/29378055 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHN2
Nearest miRNA
hsa-mir-1183/Upstream/2208492; hsa-mir-10399/Downstream/302679;
Nearest TSS
ENST00000635602/Upstream/42348; ENST00000491856/Downstream/18593;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/182625, chr7-CpG: 17/Downstream/185438
Upstream sequence
ccttgcgtccttctaggtaattacacatcgattgtttgatgaatgttcttggatctccctgggtatttctaccaagtctgtaattACACTACTCTGGTTG
Downstream sequence
TCCTTTTGCTCTGTCATGGTTCTCAGGGTTCCATGGCTTCTCAAAGACCAGGCTTAATGATGTTTCATCAACACCTTTCAAGTCAAGGATGCAGCTCAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate