Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene764772625584670782673089681801673580682033681829689441686750690249652850656213657976660282672436674338663276664603683800684721661209661945646567646768692852693001693312693461681872681941653128653187695178
Basic Information
VIS ID
TVIS44031691
Fusion event
HTLV-1-LOC107986245 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
NCBI36/hg18
Start
678967/695178 (Hg38)
End
678967/695178 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986245
Nearest miRNA
hsa-mir-571/Upstream/344926; hsa-mir-12113/Downstream/1291206;
Nearest TSS
ENST00000502981/Upstream/5737; ENST00000475288/Downstream/10570;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/5986, chr4-CpG: 37/Downstream/9335
Upstream sequence
TACATTGTGTGATCAGGTATCTACTTTCTTATCTACATGGTGTGAAATGAGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTATAAAATGAACAT
Downstream sequence
GTGTTAAAtcagagacttgaagtgcctgagactttgctctgctcacaagctaacaagctagccagccaatttcacacatacgtggacacgggaaacatca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate