Basic Information
VIS ID
TVIS44031699
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
NCBI36/hg18
Start
28293824/28094726 (Hg38)
End
28293824/28094726 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-12136/Upstream/1540133; hsa-mir-101-1/Downstream/2644430;
Nearest TSS
ENST00000473358/Upstream/6030; ENST00000465645/Downstream/82462;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5925, chr1-CpG: 36/Downstream/137908
Nearby gene
EYA3(-6055) ; SPCS2P4(+309) ;
Upstream sequence
gatggcattctagcttgcagccaggttagtctggagggtccaacacatatgcctgacactgaaaggctgggttcagctcgccccaatgcatgtagtctca
Downstream sequence
gagcctttccacgtggtctattagggtagctgaacttttcacatggcagctcacggatccataaagacaggttgtggaagctgccattcttttaagtcca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate