Basic Information
VIS ID
TVIS44031720
Fusion event
HTLV-1-PRIM2B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q11.1
Reference genome
NCBI36/hg18
Start
57512235/60436529 (Hg38)
End
57512235/60436529 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRIM2B
Nearest miRNA
hsa-mir-10398/Upstream/3046317; hsa-mir-10524/Downstream/10940431;
Nearest TSS
ENST00000381078/Upstream/2398063; ENST00000622616/Downstream/286619;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2474979, chr6-CpG: 45/Downstream/1849421
Upstream sequence
TAAAGTATTGTGTCTCTAGATACCTTTTATTAAGGTTAAGCAGTTTTTGTGTTATAATGCACATAATTTCTGTTATAAACATTTTTGAGTAGTAATAATG
Downstream sequence
GATTGTGGAAGCAGCTTAAAGTTCTGATGCTCACTGTTATTTTTTTATTAGGAATTTGATGTtgtaagagttaaagaaggaggaaagaaacacgaaaagc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate