Basic Information
VIS ID
TVIS44031735
Fusion event
HTLV-1-LOC112267868 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
NCBI36/hg18
Start
29961540/30422583 (Hg38)
End
29961540/30422583 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112267868
Nearest miRNA
hsa-mir-208a/Upstream/2789305; hsa-mir-1185-1/Downstream/592063;
Nearest TSS
ENST00000550708/Upstream/125540; ENST00000555429/Downstream/51487;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/494369, chr14-CpG: 59/Downstream/136344
Upstream sequence
agatacattgcatgagcaagggagaagtcaggagagacacgagagttgtctctaaatagttatagcattggtctgacggagagggatgaaaatagattct
Downstream sequence
gagcagcaatctcaaaaatctgagaaagtcttcattgacaaaaccttcaggaaggcagctttcagctcagtatgaATCTTAGAGGTCTCCTACCCAATCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate