Basic Information
VIS ID
TVIS44031753
Fusion event
HTLV-1-SEC16A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
NCBI36/hg18
Start
138483228/136468955 (Hg38)
End
138483228/136468955 (Hg38)
Orient
+
Location type
Intronic
Target gene
SEC16A
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-877-5p ; hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-27b-3p ; hsa-mir-93-5p ; hsa-mir-27a-3p ; hsa-mir-218-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1228-5p ; hsa-mir-1249-5p ; hsa-mir-128-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-1321 ; hsa-mir-216a-3p ; hsa-mir-22-5p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3127-5p ; hsa-mir-3150b-3p ; hsa-mir-3175 ; hsa-mir-3612 ; hsa-mir-3666 ; hsa-mir-3681-3p ; hsa-mir-3691-3p ; hsa-mir-3918 ; hsa-mir-4295 ; hsa-mir-4302 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-454-3p ; hsa-mir-4689 ; hsa-mir-4710 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4773 ; hsa-mir-4779 ; hsa-mir-4784 ; hsa-mir-503-5p ; hsa-mir-5088-5p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-542-5p ; hsa-mir-5582-5p ; hsa-mir-5695 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-648 ; hsa-mir-650 ; hsa-mir-6727-5p ; hsa-mir-6777-5p ; hsa-mir-6797-5p ; hsa-mir-6858-5p ; hsa-mir-6878-5p ; hsa-mir-6889-5p
Nearest miRNA
hsa-let-7a-1/Upstream/1618148; hsa-mir-126/Downstream/50613;
Nearest TSS
ENST00000422679/Upstream/1904; ENST00000354376/Downstream/8126;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2264, chr9-CpG: 17/Downstream/3778
Upstream sequence
ctttttttttcttgagacaggtttcactctgtcgcataggctggagtgcagtgacatgatctcagcttaacacaacctccacctcccaggctcaagcaat
Downstream sequence
cctcccacctcagcttctgagtagctgggactacaggcacgcgctaccacacctggctaattttttatatttttcatagacatggggtttcaccatgttg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate