VISDB Viral Integration Site DataBase

VIS ID

TVIS44031763

Fusion event

HTLV-1-SYNCRIP integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr6

Cytoband

q14.3

Reference genome

Start

End

86406297/85639860 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-148b-3p ; hsa-mir-29a-3p ; hsa-mir-494-3p ; hsa-mir-548d-3p ; hsa-mir-548j-3p ; hsa-mir-548h-3p ; hsa-mir-548x-3p ; hsa-mir-548z ; hsa-mir-548ac ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548bb-3p ; hsa-mir-3688-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-3915 ; hsa-mir-526b-5p ; hsa-mir-891b ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-3928-3p ; hsa-mir-3978 ; hsa-mir-631 ; hsa-mir-3661 ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-101-5p ; hsa-mir-5680 ; hsa-mir-4694-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-4729 ; hsa-mir-656-3p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-5582-3p ; hsa-mir-425-5p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-219b-5p ; hsa-mir-600 ; hsa-mir-4502 ; hsa-mir-802 ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-510-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-3121-3p

Nearest miRNA

hsa-mir-10398/Upstream/7100551; hsa-mir-1202/Downstream/4672882;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/45517, chr6-CpG: 200/Downstream/1973

Upstream sequence

AACAATCTTATTGTCAAAGCTGCTTTGAGAAATAGTCTAATAATCCATACTGATGGAAGTGGAGGGCAGCAGGGTTAACATTCTAAATTCATTGGGGTTT

Downstream sequence

GAGACTCCTAAAAAAAAAAGCCAGTTGCCAAATGTACATTCTCCATCAGTATTTCAACTGTCAATAAGCTGGCTTTGCAGCTTTTCAAAAAATATTCTAG