Basic Information
VIS ID
TVIS44031766
Fusion event
HTLV-1-LINC00373 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q31.2
Reference genome
NCBI36/hg18
Start
87621173/88170917 (Hg38)
End
87621173/88170917 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00373
Nearest miRNA
hsa-mir-1297/Upstream/552177; hsa-mir-1267/Downstream/2060265;
Nearest TSS
ENST00000623511/Upstream/28050; ENST00000424165/Downstream/369947;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/493287, chr13-CpG: 41/Downstream/1192241
Upstream sequence
TTCTGATATATGCTTTAAAATATGTAGTTATATATTTAGTATTCAGGTCTCTTTACTCTTAACTGTTTAGGTATACTATAGAATAATATTTATAGATTTG
Downstream sequence
TATTATTTGTCTCTATGTAGTTTCTGAGAATCATTGTATAGTAATCACTGTGTAAGGAAATCTTTTGAATCAGGTAATTTTCTTTTAGTAGCATTAATAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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