Basic Information
VIS ID
TVIS44031772
Fusion event
HTLV-1-SIDT1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
114736357/113534820 (Hg38)
End
114736357/113534820 (Hg38)
Orient
-
Location type
Intronic
Target gene
SIDT1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7g/Upstream/102620; hsa-mir-12124/Downstream/60056;
Nearest TSS
ENST00000440867/Upstream/1643; ENST00000488390/Downstream/49862;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1377, chr3-CpG: 81/Downstream/161240
Upstream sequence
CCTAAATCATTGGTAAGAAAACTCAAATTACATGTGCTAAGTAAATCCTGACATCAGGCTTTGGTATTTCTTGCAGTTCTGCATAGAGATAGAGCATCTA
Downstream sequence
CTTATGAATTGTTGCCTTTACATTTTCCCCTTGTACTGTGTGAGTTTTGCACTTGAGATCACCTGGTtgacttccctagtaaaccttgagatattgaggg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate