Basic Information
VIS ID
TVIS44031777
Fusion event
HTLV-1-LOC105378486 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
q25.2
Reference genome
NCBI36/hg18
Start
113770627/112020879 (Hg38)
End
113770627/112020879 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
LOC105378486
Nearest miRNA
hsa-mir-107/Upstream/1031866; hsa-mir-202/Downstream/278733;
Nearest TSS
ENST00000439456/Upstream/668776; ENST00000643850/Downstream/162831;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/941334, chr10-CpG: 35/Downstream/162646
Upstream sequence
AAATGCTCTTGTTCCATTGTGTGCATGTTACATGTGTGAAAGGGTGGTCAAGTACAATGGTAATCTTAATCATATAACCAGAGCTCTCTTGATAGGGTAC
Downstream sequence
ATATGTTCCTGGAAAGATGTATGCAAATCAAATTTTATTTGAAATGCACTTGGGAATTCACCCAGCAGTGAATTATTTAGGAAACCAGTAATTCCTGGAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate