Basic Information
VIS ID
TVIS44031778
Fusion event
HTLV-1-STARD4-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
NCBI36/hg18
Start
110930342/111566745 (Hg38)
End
110930342/111566745 (Hg38)
Orient
+
Location type
Intronic
Target gene
STARD4-AS1
Nearest miRNA
hsa-mir-10397/Upstream/1052830; hsa-mir-103a-1/Downstream/4688998;
Nearest TSS
ENST00000502646/Upstream/54155; ENST00000513221/Downstream/163644;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/53998, chr5-CpG: 73/Downstream/190754
Upstream sequence
gacatgaagtccttgcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtcgaacatttaagtctttaatcc
Downstream sequence
atcttgaattgatttttgcataagatgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaataggga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate