Basic Information
VIS ID
TVIS44031782
Fusion event
HTLV-1-LOC101929976 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
NCBI36/hg18
Start
183268900/182695928 (Hg38)
End
183268900/182695928 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
LOC101929976
Nearest miRNA
hsa-mir-10b/Upstream/1390276; hsa-mir-1244-1/Downstream/1683047;
Nearest TSS
ENST00000437798/Upstream/172736; ENST00000469118/Downstream/20113;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/803136, chr2-CpG: 53/Downstream/20038
Upstream sequence
aagaaaatacacagatggcaagtaagcatatgaaaagctgttccatgtcatatgtcaataaggaaatccaaattaaagcaagatactactacatacctat
Downstream sequence
cagaatggccaaaatccagaacactgacaacaccaaatgctagcaagtatgtggaacaacaggaactctcattcattgctggtgagaaggcaaaatgaca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate