Basic Information
VIS ID
TVIS44031784
Fusion event
HTLV-1-LINC01278 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
NCBI36/hg18
Start
62608162/63471557 (Hg38)
End
62608162/63471557 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01278
Nearest miRNA
hsa-let-7f-2/Upstream/8019975; hsa-mir-105-1/Downstream/314445;
Nearest TSS
ENST00000429181/Upstream/120213; ENST00000617377/Downstream/172491;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/120010, chrX-CpG: 43/Downstream/283276
Upstream sequence
GAGTCTTTGTTGCAGACAAGATTGCATGGACTCCTTTCTTGCTGCTTCTCTCCCAAATGTATATTGAGAAACTTTTGCATTAACATGAGGAACAACAACA
Downstream sequence
acaacaacaaacaaaataaaacaaaaacaagaaacaaaaaactctgagaagtgtaaagaggaaggtcaactggttagggacccatgtactgaaattgcaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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