Basic Information
VIS ID
TVIS44031786
Fusion event
HTLV-1-LINC02109 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p13.3
Reference genome
NCBI36/hg18
Start
29189066/29153202 (Hg38)
End
29189066/29153202 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
LINC02109
Nearest miRNA
hsa-mir-10397/Upstream/11997210; hsa-mir-103a-1/Downstream/2782900;
Nearest TSS
ENST00000502646/Upstream/9690; ENST00000602740/Downstream/334;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/224672, chr5-CpG: 37/Downstream/2040643
Upstream sequence
TGGATTTCATTTCATAGGTTTTCATTAGGAGGCCAATTTGTAAATGTAACCAATAAGCATTCAAATGATTGCTGAGACACTGAATTTTTTTAATTACTCA
Downstream sequence
TGTATGTTGAGGAATTCTGATTTTTTTCTGTAGTTAGAATAGCTCTCCACAATACTAACTAACTAACTAAATAAATAAATAaaacaaccattcagtggct
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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