Basic Information
VIS ID
TVIS44031802
Fusion event
HTLV-1-PTPRD integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr9
Cytoband
p24.1
Reference genome
End
8329482/8339482 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-2/Upstream/2331578; hsa-let-7a-1/Downstream/10233824;
Nearest cancer related gene
PTPRD(TSG, No orient, 0)
Upstream sequence
GGACAATGCTGGCCATGACAATAACACATTGCACCACCACAGCATACTTGCACCACTATGGTTTGGAATGAAGAGAACCATCAGTATGGACATAGAAAGA
Downstream sequence
AACCTCCGAATTGATTTGTTCCAATCTTACTTGTCAAGGAAACGAGGGGCCCAGTCCATTTTAATGACTTGGCTAAACCCTGCAGAGTCATTGGCCAAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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