Basic Information
VIS ID
TVIS44031808
Fusion event
HTLV-1-LOC105378720 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
NCBI36/hg18
Start
51761337/51523077 (Hg38)
End
51761337/51523077 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LOC105378720
Nearest miRNA
hsa-mir-12136/Upstream/462974; hsa-mir-101-1/Downstream/313267;
Nearest TSS
ENST00000473358/Upstream/3749; ENST00000467064/Downstream/54102;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3853, chr1-CpG: 32/Downstream/93825
Upstream sequence
cagaccaggtggctcacatttgtaattttagcactctggaaggccgaggcaggaggattgcatgagcccaggagttcaagaccagcctgggcaacatagt
Downstream sequence
gagacctcgtctctatttttttaaaatcaatcaaataaaaataaataaataaataaGAATAAGGGTGCTTTGAACAACTGACATATCCCTGTCATTGAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate