Basic Information
VIS ID
TVIS44031815
Fusion event
HTLV-1-SRGAP2B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
142776684/144943782 (Hg38)
End
142776684/144943782 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
SRGAP2B
Nearest miRNA
hsa-mir-101-1/Upstream/27849054; hsa-mir-1182/Downstream/906805;
Nearest TSS
ENST00000473358/Upstream/301410; ENST00000400889/Downstream/11664;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/59747, chr1-CpG: 264/Downstream/149204
Upstream sequence
tttgccttgggctgagggggttcctaggacatgagacttttagttttatctgttcaactgttgatggcatttggatagttttcagtttgaggctattatg
Downstream sequence
tatgttataaataatgctgctatgaacattataatgggaagttattctttccagTGTATGGTTGAACCTGGTCACAAGCCAGGCTTTAAGAATAGTGAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate