Basic Information
VIS ID
TVIS44031833
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
NCBI36/hg18
Start
59439353/59201093 (Hg38)
End
59439353/59201093 (Hg38)
Orient
+
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/3975370; hsa-mir-101-1/Downstream/532134;
Nearest TSS
ENST00000473358/Upstream/68620; ENST00000583635/Downstream/88547;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/54042, chr1-CpG: 71/Downstream/95337
Upstream sequence
gagttccaaggaatagtattacaaagacccacacgaaagcttcagcttcttgtgagcttgccctggctcacagatcattatttttcccacgttctggtgg
Downstream sequence
tcaggtaagtcactgaagccagcccagagtcaaagggaagacttaagttaacttcacctcttgatgtaggaactgggagcagtcatctgtggataCTACC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate