Basic Information
VIS ID
TVIS44031841
Fusion event
HTLV-1-PID1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
NCBI36/hg18
Start
229712169/229139209 (Hg38)
End
229712169/229139209 (Hg38)
Orient
-
Location type
Intronic
Target gene
PID1
Nearest miRNA
hsa-mir-10b/Upstream/1667022; hsa-mir-1244-1/Downstream/2223499;
Nearest TSS
ENST00000437798/Upstream/454629; ENST00000465090/Downstream/92876;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/957372, chr2-CpG: 50/Downstream/131783
Upstream sequence
agaaagagaaagaaagaaagaaagaaagaaagaaagaaagCAAGCGAGCGAGCAAGCGAGCTTCCCTTGACCAAACACTCCCTTGGAATACATGTATTTT
Downstream sequence
TAGTTTTGCTTCACCATGATAGGGCACTTAACCTGTCTTTAGCTACACTTAAAAGAAAGAAAAAGGGATACAGTGTCACAAATGGCACTTCCTTCACAGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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