Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene39215840390519983909667139107704391389033909665939108363391248503912807939106225391089643909595039098251391319303913408739129525391311983908861539089679391012303910137939133919
Basic Information
VIS ID
TVIS44031848
Fusion event
HTLV-1-TTC21A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
p22.2
Reference genome
End
39150414/39133919 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12127/Upstream/1164439; hsa-let-7g/Downstream/4287;
Upstream sequence
gattacccttgggcaagggcatgtagacgagagcacaggcagcgctaatgccatgcaatacatgcctgcatggggatacagggcaccacttggaggaatg
Downstream sequence
gtacctgccccagagtctggggcacagagggctctcagagcagtgaggccagaggtgaagctgaaggatgaaaatgtgttagcttggCCCAACTTTCAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate