Basic Information
VIS ID
TVIS44031859
Fusion event
HTLV-1-CX3CR1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
p22.2
Reference genome
NCBI36/hg18
Start
39281930/39265435 (Hg38)
End
39281930/39265435 (Hg38)
Orient
+
Location type
Intronic
Target gene
CX3CR1
miRNAs that regulate target gene
hsa-mir-296-3p
Nearest miRNA
hsa-mir-12127/Upstream/127169; hsa-let-7g/Downstream/4848777;
Nearest TSS
ENST00000440867/Upstream/72839; ENST00000326306/Downstream/14599;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/84256, chr3-CpG: 125/Downstream/117770
Upstream sequence
ATCATTTTGTGCCTGTAAGAAATAACAACAAAAATCTTTCCTCACTAGTCAGCATCAGGTTCAGGAACTCCAGGTTCTCTGTAGACACAAGGCTTTGGGA
Downstream sequence
TTCCCTTCAGAGAAGGAGCAATGCATCTCCATCACTCGTGTGGTAAGTAAAATTGCTGCTCAGAACACTTCCATGCCTGCTCCTTTGTGATTCAGATGAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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