Basic Information
VIS ID
TVIS44031876
Fusion event
HTLV-1-SCN2A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
165840035/165275279 (Hg38)
End
165840035/165275279 (Hg38)
Orient
+
Location type
Intronic
Target gene
SCN2A
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-128-1/Upstream/4867397; hsa-mir-10b/Downstream/3307664;
Nearest TSS
ENST00000437798/Upstream/34219; ENST00000486878/Downstream/18752;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/432896, chr2-CpG: 94/Downstream/518120
Upstream sequence
ATAACTCTTCTGATGCATTAATTCCCCATGGAACCCATTCATCTAGGGAGGCTCATGacttggctagattctccactttccttcagggcttttgttaaac
Downstream sequence
ctcatttcttcagcaagcctctccatgaccaccctatctaaaattgcaatacatccttctcctccccaaccctgattattttttctctctttttcataaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate