Basic Information
VIS ID
TVIS44031903
Fusion event
HTLV-1-LOC105374458 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
NCBI36/hg18
Start
34802687/34724116 (Hg38)
End
34802687/34724116 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374458
Nearest miRNA
hsa-mir-1301/Upstream/1305552; hsa-mir-10b/Downstream/747289;
Nearest TSS
ENST00000437798/Upstream/10526; ENST00000621006/Downstream/7599;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/996499, chr2-CpG: 191/Downstream/1631138
Upstream sequence
TCTTGATTGTTTTGGTCACATAATTTTTATATTAAATCCTGTGATACTCATTGTTTTTCTATAAAAATCATCACATTTCAAGTGTTAGGTAGTGTGTATA
Downstream sequence
GAACTGACAGGTAATAATTTTGACAGGTATGGGATTAAATAGAATCCATCCAAAACCATTTACTTTCCTTATACATTATAGCAGAAGTGGCTAAATTAGA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate