Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene163171171606713916180762161802381618558516181908161821601617900016179201161797811617984016192128
Basic Information
VIS ID
TVIS44031910
Fusion event
HTLV-1-NACAP6 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
p15.1
Reference genome
NCBI36/hg18
Start
16245237/16192128 (Hg38)
End
16245237/16192128 (Hg38)
Orient
+
Location type
Intronic
Target gene
NACAP6
Nearest miRNA
hsa-mir-10397/Upstream/256868; hsa-mir-103a-1/Downstream/963802;
Nearest TSS
ENST00000502646/Upstream/11366; ENST00000513041/Downstream/236408;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/11817, chr5-CpG: 105/Downstream/273001
Upstream sequence
AATTACTCTTTTGAAACACCAAAATGAATAAATAAATAAAAAAGAGTCCTCCTTTTCAGACGGTTCCCTTTTTAATTCCATTATAGCATTTATAGTGTCA
Downstream sequence
TTACTGTTGTTCCTCAGGACTCGGACTGTCTTTGCTCATCACCCCTTTGTTTATGACATAACAAATTCTATGCCCTTAACTTCCACATTTGTTTCATTAC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate