VISDB Viral Integration Site DataBase

VIS ID

TVIS44031918

Fusion event

HTLV-1-STX6 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr1

Cytoband

q25.3

Reference genome

Start

End

179257089/181021330 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-7855-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-19b-3p ; hsa-mir-4710 ; hsa-mir-19a-3p ; hsa-mir-4792 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4786-5p ; hsa-mir-3124-3p ; hsa-mir-3691-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-634 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3591-5p ; hsa-mir-548aw ; hsa-mir-4291 ; hsa-mir-142-3p ; hsa-mir-6787-3p ; hsa-mir-5690 ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-214-3p ; hsa-mir-2115-3p ; hsa-mir-922 ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-3180-5p ; hsa-mir-6869-5p ; hsa-mir-3944-5p ; hsa-mir-4697-3p ; hsa-mir-567 ; hsa-mir-5191 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-665 ; hsa-mir-4307 ; hsa-mir-411-5p ; hsa-mir-483-5p ; hsa-mir-548al ; hsa-mir-4445-3p ; hsa-mir-8066 ; hsa-mir-513b-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-152-3p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-4530 ; hsa-mir-6739-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-4684-5p ; hsa-mir-4799-5p ; hsa-mir-5579-3p ; hsa-mir-2117 ; hsa-mir-138-2-3p ; hsa-mir-6809-3p ; hsa-mir-6842-3p ; hsa-mir-4753-3p ; hsa-mir-647 ; hsa-mir-670-5p ; hsa-mir-642b-5p ; hsa-mir-4445-5p ; hsa-mir-9-5p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-130b-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20b-5p

Nearest miRNA

hsa-mir-101-1/Upstream/582940; hsa-mir-1182/Downstream/11694998;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/66774, chr1-CpG: 18/Downstream/761

Upstream sequence

TAAGCATTAAGAACTTTCAATCAAGGAAAAAACATCTATTTTAAAAATTAACCCCTAAATCAATCCTTCTAATAAATATCACATTTTCTAGGTAGGGATA

Downstream sequence

CACATATTACCAGTAAATTTACAACTCAGCATTTTCCCATCTAAATTAGAGTAAGGTGAAGAAAAAAAACTTTCCAGGGAAATATTAAGAAGTAGTATAA