Basic Information
VIS ID
TVIS44031925
Fusion event
HTLV-1-EFCAB6-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
NCBI36/hg18
Start
42247047/43519834 (Hg38)
End
42247047/43519834 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
EFCAB6-AS1
Nearest miRNA
hsa-mir-1281/Upstream/1596537; hsa-let-7a-3/Downstream/1681120;
Nearest TSS
ENST00000624155/Upstream/3727; ENST00000564696/Downstream/12227;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/84592, chr22-CpG: 53/Downstream/292233
Upstream sequence
aaaaaaagaaaaaagatctgggtggtaggtgtgctggttgcaacttgtggcatcactgcttctaggccttcttagacacagagctaggaaatatatttag
Downstream sequence
tgtactaacccatttatgcacacatatttatctatctctacctgtatccaaccatccacccatctatcaacctactacctatcatctatcaatcatctac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate